|
|
|
|
|
|
|
|
|
|
GeneXproTools
|
|
|
|
|
GeneXproServer
|
|
|
|
|
Gene Expression Programming
|
|
|
|
|
|
|
|
|
|
|
- Unattended Runs
Create runs without manual intervention.
- Model Management
Import models between different runs.
- Model simplification
Smaller and simpler models for faster and leaner operation.
- Easy model refreshing
For when circumstances change and models go slightly out of date.
- Database, Excel and text files support
Easy and fast data loading from multiple sources.
- Data visualization tools
For data and model results visualization.
- Extensive model analysis tools
Curve fitting charts, target/model comparison tables, and standard statistical analyses on large training and testing sets.
- Code generation in 16 programming languages
Ada, C, C++, C#, Fortran, Java, Java Script, Matlab, Pascal, Perl, PHP, Python, Visual Basic, VB.Net, Verilog, and VHDL.
- User Defined Grammars
Automatic code generation in virtually any programming language.
- Clear model visualization
Quicker and more complete understanding of the structural intricacies of your models.
- Very informative Run Panel
With variable usage, model size and curve fitting charts!
- Scoring Engine
Immediate model scoring in the GeneXproTools environment.
- Default run templates
Design excellent models with just a mouse click.
- User friendly interface
Easy to use and very efficient.
|
|
|
|
|
|
|
|
|
|
Ensemble Methods
Automated creation of Ensemble Methods integrated with model deployment to Excel. To create an Ensemble Method all you need to do is choose the menu Deploy Ensemble to Excel in a run with several models. The number of models you can deploy automatically depends on your edition of GeneXproTools.
|
|
|
|
|
|
|
Model Deployment to Excel
GeneXproTools creates an Excel file that includes the model exported to VBA. This means that you can use the Excel file to make predictions on new data independently of GeneXproTools.
|
|
|
|
|
|
|
Multiple Unattended Runs
Unattended Runs which allows you to create a number of different runs without manual intervention.
This is a very useful feature for overnight runs.
|
|
|
|
|
|
|
Model Management
Import models between different runs even if they belong to a different category, for example: it is possible to import models created in Classiication runs into Function Finding runs.
|
|
|
|
|
|
|
Unlimited Records
This version of GeneXproTools can process an unlimited number of
records. In practice this means that you can
create models using several dozens of thousands records thus increasing the level of trust of the models by
exposing them to a large set of cases. This is valid for all editions of GeneXproTools and applies to training data,
testing data and scoring data. GeneXproTools can easily handle a few million cells of data with very good
data load times and a compact file format.
|
|
|
|
|
|
|
Unlimited Variables
The new Enterprise Edition supports an unlimited number of variables.
This is especially useful for the classification of DNA Microarrays, for example.
GeneXproTools produces excellent models in a few seconds or minutes using sets well in
excess of 25,000 variables on any modern desktop computer. This new capability also provides
very interesting possibilities in the realms of data filtering and feature selection.
|
|
|
|
|
|
|
More Variables
The Standard Edition of GeneXproTools 4.3 was expanded from 5
independent variables to 16, whereas the Advanced Edition was
expanded from 20 to 64 independent variables. Furthermore, a
new Academic Enterprise supporting unlimited variables is also available.
|
|
|
|
|
|
|
Five Different Frameworks
GeneXproTools features five different frameworks covering Function Finding, Logistic Regression,
Classification, Time Series Prediction, and Logic
Synthesis. Each framework is optimized to its problem domain and
has specific data visualization, functions, fitness functions and code generation facilities.
However, at their core, they all bring together the power of Gene Expression Programming and Statistics.
|
|
|
|
|
|
|
Exceptional Predictive Accuracy
The models created by GeneXproTools generalize outstandingly well
and as long as a representative set of training samples is used there
is no risk of the model overfitting the data and the learning process
can continue indefinitely with better and better models being created
with time. Notwithstanding, GeneXproTools allows the use of a testing
set for measuring the generalization capabilities of the evolved models
and also performs an extensive statistical analysis on the testing data.
|
|
|
|
|
|
|
Fast Custom Fitness
GeneXproTools supports custom fitness functions written in Javascript that you
can easily add to any run. The custom fitness function can load external components
and delegate the processing or load external datasets for complex fitness function.
The fitness function has access to the relevant model information including model size,
the model results and all the target data.
|
|
|
|
|
|
|
More than 30 Fitness Functions
This very large spectrum of fitness functions allows you to judge your models using the measures you
are used to work with. Most standard statistical measures are covered and for each of them there is
a counterpart with parsimony pressure. The new functions also allow the exploration of different
fitness landscapes increasing the chance of finding an excellent model for your problem.
|
|
|
|
|
|
|
More than 270 Functions
The largest pool of operations in the industry is now accessible to your models including
a section of decision rules with three and four arguments.
The new Logic Synthesis algorithm includes dozens of rules and all the combinations for four
variable ULM’s. The User Defined Functions and Dynamically Defined Functions also benefited
from the fast script environment with very good performance.
The Functions panel includes random function selection, function search and blanket weight changes.
|
|
|
|
|
|
|
|
|
|
Function Selection Facility
The Function Selection facility of GeneXproTools 4.3 allows
you to experiment with different function sets very quickly
either by pressing the Random button or by selecting certain sub-sets of functions.
|
|
|
|
Automatic Function Weighting
A brand new algorithm that dynamically adjusts the number of functions to the data environment
compensating for very wide datasets. Coupled with finer adjustments at the function level
through individual function weighting this feature simplifies the selection of appropriate
function sets and provides better defaults for generic model creation.
|
|
|
|
|
|
|
User Defined Functions
Dynamic User Defined Functions (DDFs) behave exactly like the
built-in functions of GeneXproTools and therefore can be
used in the same manner to evolve models with them.
On the other hand, Static User Defined Functions (UDFs)
are useful for expressing known relationships between certain
variables in datasets as GeneXproTools can then use them to create more
complex models composed of several simpler building blocks.
|
|
|
|
|
|
|
Full Run History Analysis
All the best-of-generation models discovered during a run are saved and you
can pick them up for analysis at the History Panel by checking the model you are
interested in. Each of these intermediate models can then be analyzed exactly as
you do for the best-of-run model, that is, you can check their performance in the testing
set, check their vital statistics, automatically generate code with them, visualize their
parse trees and use them as seed to create better models from them.
|
|
|
|
|
|
|
Model Optimization
With GeneXproTools 4.3 you can use an existing model (which could have been
either generated by GeneXproTools or by another modeling tool) as the starting
point of an evolutionary process so that more complex, finely tuned models could
be created. For models created outside of GeneXproTools or for GeneXproTools models
modified by the user, the starting model or seed is fed to the algorithm through
the Change Seed window where both the fitness and structural soundness of the model
are tested. For models created in the GeneXproTools 4.3 environment, the seed (the
best or active model of the previous run) is fed to the algorithm every time you
click the Optimize or Simplify buttons in the Run Panel.
|
|
|
|
|
|
|
Model Simplification
Optimization mode that reduces the size of a model while improving its accuracy at
the same time. The Simplify Method reduces the redundancy in the model to an
absolute minimum creating very lean models that are easier to study and less
computer intensive in production environments. When used with Logic Synthesis
it reduces the number of gates needed for the logic circuit, reducing costs and memory footprint.
|
|
|
|
|
|
|
Easy Model Refreshing
When a model goes out of date and needs a little refreshing, you
just have to replace the old training set (that is, the data set
that was used to create the model you want to refresh) with the new
one and then click Optimize in the Run Panel.
|
|
|
|
|
|
|
Database, Excel and Text Files Support
GeneXproTools supports most types of databases through ODBC and includes
enhanced support for Microsoft SQL Server and Oracle, Access database and
Excel files (all versions up to 2010). For the very large datasets GeneXproTools uses a high performance
text file manipulation algorithm that supports fast loading and several data transformations.
|
|
|
|
|
|
|
Data Visualization Tools
In the Data Panel you can visualize the distribution of all the inputs
and spot simple relationships between the independent variables and the
dependent variable. Curve fitting and Target/Model comparison plots in
the Run Panel allow you to monitor how well the evolving models are fitting
the target. In the Results/Predictions Panel you can compare the output
of your model with the target output not only on the entire training
set but also on the entire testing set using different charts.
|
|
|
|
|
|
|
Extensive Model Analysis Tools
Curve fitting charts in two and three dimensions are available for
Function Finding and Time Series Prediction and target/model comparison
charts for Classification and Logic Synthesis. Extensive statistical analyses
(R-square, correlation coefficient, mean squared error, root mean squared error,
mean absolute error, relative squared error, root relative squared error,
relative absolute error, classification error, classification accuracy, confusion
matrix, true positives, true negatives, false positives, false negatives, sensitivity,
specificity, positive predictive value, and negative predictive value) are performed
both on the training and testing sets for immediate evaluation of the predictive
accuracy of the model in real use. In addition, you can also replace the testing
set for further checking model generalization and manually tweak with the model itself.
|
|
|
|
|
|
|
Code Generation in 17 Programming
Languages
The models can be translated into as many as sixteen programming
languages (Ada, C, C++, C#, Excel VBA, Fortran, Java, Java Script, Matlab,
Pascal, Perl, PHP, Python, Visual Basic, VB.Net, Verilog, and VHDL)
including specialty languages like VHDL and Verilog and languages
relevant to the bio-informatics field like Perl and Python and
the simulation fields like Ada and Matlab.
|
|
|
|
|
|
|
User Defined Grammars
With your own grammars you can translate automatically the
models evolved by GeneXproTools if you happen to prefer a
programming language not already covered by the 16 built-in
grammars of GeneXproTools 4.3 (Ada, C, C++, C#, Fortran, Java,
Javascript, Matlab, Pascal, Perl, PHP, Python, Visual Basic, VB.Net, Verilog, and VHDL).
|
|
|
|
|
|
|
Clear Model Visualization
With the parse tree generator of GeneXproTools you can automatically
convert your models into diagram representations or parse trees for a
quicker and more complete understanding of their mathematical/logical intricacies.
|
|
|
|
|
|
|
Very Informative Run panel
The charts in the run panel provide invaluable information
about the model and an insight into the algorithm inner workings.
The charts show what variables are being used and which have a heavier
weight, the model’s size and its tendency over time. Also exciting are
the curve-fitting and target/model comparison charts that show how the
evolving models are fitting the data. In addition, charts with the size
of each sub-program and the total program size and charts with the sizes
and fitness of all the chromosomes are also available for a better
understanding of the evolutionary process.
|
|
|
|
|
|
|
Scoring Engine
With the scoring engine of GeneXproTools you can score your databases/Excel
or text files immediately. The scoring engine of GeneXproTools uses the Javascript
code of your models to score your data. The scores are saved to Excel or text
files and can also be visualized in the Scoring Panel.
|
|
|
|
|
|
|
Default Run Templates
The default run templates of GeneXproTools allow you to start the
modeling process with just a mouse click and yet obtain excellent results.
They also make the discovery of good models quite enjoyable and fast as
small populations of evolving models were chosen for all of them.
|
|
|
|
|
|
|
User Friendly Interface
A new and fresh look with excellent access to all the areas of GeneXproTools and many
navigation and organization options including a fully customizable toolbar. The wizards
are short and simple to use and provide guidance throughout.
|
|
|
|
|
|
|
|
|
|
|
|
|
Time Limited Trial
Try GeneXproTools for free for 30 days!
Read more...
|
|
|
|
|
|
|
|
Academic licenses of all GeneXproTools editions
are available at a discount for education institutions
& students.
|
|
|
|
Bundles of GeneXproTools & GeneXproServer are available at a discount price
for all editions of GeneXproTools, including academic editions.
|
|
|
|
|
|
|
Subscribe to the GEP-List
|
|
|
|
|
|
|
|
"Finally, a world class user interface in the field of genetic programming and
evolutionary computation !! GeneXproTools is simply unrivaled in its marvelous
user interface, the breadth of its Fitness Functions, the choice and flexibility
in Math and Logic functions, the clarity of its final Model Presentation,
and a built in panel for Scoring new data, right inside the interface.
This kind of functionality and ease of use has never been seen before
in the field of Genetic Programming. Additionally, Dr Ferreira's specific methodology
of Gene Expression Programming makes important contributions to the field of
evolutionary computation, and the various algorithms she has developed and
deployed inside of GeneXproTools are brilliantly conceived, and her methodologies
evolve highly predictive models that solve real business problems. GeneXproTools
is an extraordinary structural tour de force."
Brian C. Watt, CRM
Chief Risk Officer / Chief Financial Officer
GECC Inc, USA
|
|
|
"I have been using GeneXproTools against a variety of drug research
related problems and have found the GUI to be readily-usable and well-attuned
to the stages of predictive modeling..."
Steven J Barrett, Ph.D
Principal Scientist New Applications Team
Data Exploration Sciences
GlaxoSmithKline
|
|
|
"Gene Expression Programming, combined with GeneXproTools,
allow us here at Mercator GeoSystems to explore new and exciting
methods for spatially modelling the relationship between a company's outlets
and their customers. The GeneXproTools software is simple to use, well-designed and
very flexible. In particular the ability to load training data from a database,
and the option to create models in the programming language of our choice,
really make this product stand out. Product support is excellent and very
responsive - heartily recommended!"
Steve Hall
Mercator GeoSystems Ltd
United Kingdom
|
|
|
|
"As a professional software developer, I could have attempted
to read up on all the latest developments in the field of
evolutionary programming and start writing my own modeling tools.
One look at the GeneXproTools demo, however, was enough to convince me
of the absurdity of that thought. Not only does GeneXproTools have
all the power that I would ever need, but it also allows me to customize
all parts of the modeling process. I don't have to know the first thing
about evolutionary algorithms and yet I can write my own grammars or
fitness functions if I wanted to. It is obvious that a huge amount of work
went into the making of GeneXproTools, and I am now a very happy customer.
Keep up the great work, Gepsoft!"
Glenn Lewis
Software developer, USA
|
|
|
|
"I've been working as a coastal engineer and mathematical modeler for more than
10 years and now I'm using GeneXproTools to discover complex nonlinear relations
that exist in hydraulic and wave processes. For example, GeneXproTools recently
helped me establish several explicit approximations to the Wave Dispersion Equation
and now with the new version, which allows more independent
variables, fitness functions and unlimited records, I plan to develop my own formulae
to evaluate the wave overtopping of breakwaters and seawalls. Thanks Gepsoft for
providing such an exciting, creative and useful software tool to the scientific community."
Ricardo Carvalho
PROMAN - Centro de Estudos & Projectos, SA
Lisbon, Portugal
|
|
|
|
"GeneXproTools is being used to look at problems involving parasite populations,
where the data is highly skewed. The results using GeneXproTools are considerably
better than those obtained using conventional statistics."
Prof John Barrett
Head of the
Parasitology Group
University of Wales, UK
|
|
|
|
"We are using GeneXproTools for modeling the rainfall-runoff process and time series forecasting.
GeneXproTools has a nice graphical user interface system and a lot of flexibility in choosing
the type of input file. Configuring the problem setup, running and visualizing the
graphical outputs with GeneXproTools is indeed user friendly. Being able to get the final model
in the languages of our choice makes GeneXproTools stand out from other packages."
Professor S. Mohan
Professor & Head of the Department
Department of Civil Engineering
Indian Institute of Technology, Madras
|
|
More
|
|
|
|