1.BreastCancer_000001
Filename: 1.BreastCancer_000001.gep
|
Models
| Model |
Generation |
History |
Training Fitness |
Validation Fitness |
Training Accuracy |
Validation Accuracy |
Size |
Literals |
Variables |
| 1 |
0 |
1 |
736.298152897013 |
882.377123717624 |
91.25%
|
95%
|
19 |
6 |
F4(1), F6(4), F8(1) |
| 2 |
1 |
1 |
842.169014617352 |
863.511346049661 |
92.91%
|
94%
|
20 |
5 |
F1(3), F2(1), F6(1) |
| 3 |
5 |
1 |
861.179618551805 |
922.204193709436 |
93.85%
|
97%
|
13 |
5 |
F1(1), F4(1), F6(1), F8(2) |
| 4 |
6 |
1 |
869.492240568175 |
921.659543607648 |
94.33%
|
97%
|
20 |
5 |
F1(2), F2(2), F6(1) |
| 5 |
7 |
1 |
874.593758117143 |
922.204193709436 |
94.56%
|
97%
|
13 |
5 |
F1(1), F4(1), F6(1), F8(2) |
| 6 |
8 |
1 |
879.229530094331 |
863.787993643349 |
94.8%
|
94%
|
17 |
6 |
F3(1), F5(1), F7(1), F8(2), F9(1) |
| 7 |
9 |
1 |
889.100700649335 |
903.22208994201 |
95.27%
|
96%
|
2 |
2 |
F1(1), F6(1) |
| 8 |
85 |
1 |
893.460904297309 |
902.997426936518 |
95.51%
|
96%
|
8 |
5 |
F1(1), F5(1), F6(2), F8(1) |
| 9 |
94 |
1 |
893.535791965807 |
922.466300549176 |
95.51%
|
97%
|
6 |
3 |
F1(1), F5(1), F6(1) |
| 10 |
102 |
1 |
898.120658619272 |
922.466300549176 |
95.74%
|
97%
|
6 |
3 |
F1(1), F6(1), F8(1) |
| 11 |
104 |
1 |
911.800370911173 |
922.391412880679 |
96.45%
|
97%
|
8 |
4 |
F1(1), F2(1), F6(1), F8(1) |
| 12 |
137 |
1 |
916.255996313574 |
922.385436431765 |
96.69%
|
97%
|
7 |
3 |
F1(1), F6(1), F8(1) |
Events
| Time |
Event |
| 08/31/2013 19:28:45 |
Processing run 1... |
| 08/31/2013 19:28:45 |
WARNING: Changing the setting Genes clears the history |
| 08/31/2013 19:28:45 |
Applied setting Genes (2) |
| 08/31/2013 19:28:45 |
Applied setting HeadSize (10) |
| 08/31/2013 19:28:45 |
Applied setting MutationRate (0.02) |
| 08/31/2013 19:28:45 |
Applied setting FitnessFunction (24) |
| 08/31/2013 19:28:45 |
Applied setting SetParsimonyPressure (1) |
| 08/31/2013 19:28:45 |
Added function Pow with weight 2. |
| 08/31/2013 19:28:45 |
Loading data from file cancer_train.txt ... |
| 08/31/2013 19:28:46 |
Loading data from database... |
| 08/31/2013 19:28:46 |
Loading run file... C:\Users\ze\Documents\GeneXproServer 5 Samples\ComplexWorkflow\1.BreastCancer_1\1.BreastCancer_000001.gep |
| 08/31/2013 19:28:46 |
Initializing run... |
| 08/31/2013 19:28:46 |
Training Set size: 423 |
| 08/31/2013 19:28:47 |
Dataset loaded. |
| 08/31/2013 19:28:47 |
Starting... |
| 08/31/2013 19:28:47 |
Generation: 0 (736.298152897013, 91.25% (386)) |
| 08/31/2013 19:28:48 |
Generation: 196 (916.255996313574, 96.69% (409)) |
| 08/31/2013 19:28:49 |
Finished run. |
| 08/31/2013 19:28:49 |
Models created: 12 |
| 08/31/2013 19:28:49 |
Models: 12 |
| 08/31/2013 19:28:49 |
Last Model: 12 |
| 08/31/2013 19:28:49 |
Generation: 137 |
| 08/31/2013 19:28:49 |
Training Fitness: 916.255996313574 |
| 08/31/2013 19:28:49 |
Training Accuracy: 96.69% |
| 08/31/2013 19:28:49 |
Success |
| 08/31/2013 19:28:49 |
Loading run file... C:\Users\ze\Documents\GeneXproServer 5 Samples\ComplexWorkflow\1.BreastCancer_1\1.BreastCancer_000001.gep |
| 08/31/2013 19:28:49 |
Initializing tests for all models... |
| 08/31/2013 19:28:49 |
Testing model 1 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:49 |
Testing model 2 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:49 |
Testing model 3 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:49 |
Testing model 4 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:49 |
Testing model 5 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:49 |
Testing model 6 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:49 |
Testing model 7 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:49 |
Testing model 8 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:50 |
Testing model 9 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:50 |
Testing model 10 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:50 |
Testing model 11 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:50 |
Testing model 12 on the Validation Set with 100 records............. |
| 08/31/2013 19:28:50 |
Success |
1.BreastCancer_000002
Filename: 1.BreastCancer_000002.gep
|
Models
| Model |
Generation |
History |
Training Fitness |
Validation Fitness |
Training Accuracy |
Validation Accuracy |
Size |
Literals |
Variables |
| 1 |
0 |
1 |
959.738871307634 |
0 |
92.06%
|
0%
|
29 |
9 |
uniformity_cell_size(1), marginal_adhesion(2), single_epithelial_cell_size(2), bland_chromatin(1), normal_nucleoli(2), mitoses(1) |
| 2 |
1 |
1 |
960.245231429757 |
0 |
91.63%
|
0%
|
29 |
8 |
uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(2), single_epithelial_cell_size(2), normal_nucleoli(1), mitoses(1) |
| 3 |
2 |
1 |
975.213704293065 |
0 |
94.42%
|
0%
|
40 |
16 |
clump_thickness(1), uniformity_cell_size(5), marginal_adhesion(2), single_epithelial_cell_size(3), bare_nuclei(2), mitoses(3) |
| 4 |
8 |
1 |
983.434151719279 |
0 |
94.85%
|
0%
|
32 |
11 |
uniformity_cell_size(3), marginal_adhesion(1), single_epithelial_cell_size(2), bare_nuclei(3), mitoses(2) |
| 5 |
9 |
1 |
984.415159683326 |
0 |
95.49%
|
0%
|
32 |
11 |
uniformity_cell_size(3), marginal_adhesion(1), single_epithelial_cell_size(1), bare_nuclei(3), mitoses(3) |
| 6 |
10 |
1 |
985.653069019214 |
0 |
96.14%
|
0%
|
32 |
12 |
uniformity_cell_size(3), marginal_adhesion(1), single_epithelial_cell_size(1), bare_nuclei(4), bland_chromatin(1), mitoses(2) |
| 7 |
15 |
1 |
986.323408387267 |
0 |
96.35%
|
0%
|
32 |
12 |
uniformity_cell_size(3), marginal_adhesion(1), single_epithelial_cell_size(1), bare_nuclei(4), bland_chromatin(1), mitoses(2) |
| 8 |
20 |
1 |
986.615806048085 |
0 |
96.35%
|
0%
|
33 |
12 |
uniformity_cell_size(3), marginal_adhesion(1), single_epithelial_cell_size(1), bare_nuclei(4), bland_chromatin(1), mitoses(2) |
| 9 |
69 |
1 |
987.191465902135 |
0 |
96.14%
|
0%
|
41 |
15 |
clump_thickness(1), uniformity_cell_size(4), marginal_adhesion(1), single_epithelial_cell_size(1), bare_nuclei(5), bland_chromatin(1), mitoses(2) |
| 10 |
74 |
1 |
987.488186036919 |
0 |
96.35%
|
0%
|
41 |
15 |
clump_thickness(1), uniformity_cell_size(3), marginal_adhesion(1), single_epithelial_cell_size(1), bare_nuclei(6), normal_nucleoli(1), mitoses(2) |
| 11 |
76 |
1 |
987.871431257432 |
0 |
96.35%
|
0%
|
32 |
12 |
clump_thickness(1), uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(1), bare_nuclei(2), bland_chromatin(2), normal_nucleoli(2), mitoses(2) |
| 12 |
77 |
1 |
988.047332343885 |
0 |
96.78%
|
0%
|
32 |
13 |
clump_thickness(1), uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(2), bare_nuclei(3), bland_chromatin(2), normal_nucleoli(2), mitoses(1) |
| 13 |
79 |
1 |
988.59482604292 |
0 |
96.78%
|
0%
|
32 |
13 |
clump_thickness(1), uniformity_cell_size(1), uniformity_cell_shape(2), marginal_adhesion(1), bare_nuclei(3), bland_chromatin(2), normal_nucleoli(2), mitoses(1) |
| 14 |
84 |
1 |
989.13799726799 |
0 |
96.57%
|
0%
|
34 |
13 |
clump_thickness(2), uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(1), bare_nuclei(3), bland_chromatin(2), normal_nucleoli(2), mitoses(1) |
| 15 |
85 |
1 |
989.15424158248 |
0 |
96.57%
|
0%
|
38 |
14 |
clump_thickness(1), uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(1), bare_nuclei(4), bland_chromatin(2), normal_nucleoli(3), mitoses(1) |
| 16 |
91 |
1 |
989.18673021146 |
0 |
96.57%
|
0%
|
40 |
15 |
clump_thickness(1), uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(2), bare_nuclei(4), bland_chromatin(2), normal_nucleoli(3), mitoses(1) |
| 17 |
92 |
1 |
989.48623671918 |
0 |
96.35%
|
0%
|
41 |
15 |
clump_thickness(3), uniformity_cell_size(1), marginal_adhesion(1), bare_nuclei(3), bland_chromatin(1), normal_nucleoli(5), mitoses(1) |
| 18 |
95 |
1 |
990.425130067004 |
0 |
97%
|
0%
|
40 |
13 |
clump_thickness(3), uniformity_cell_size(1), marginal_adhesion(1), bare_nuclei(2), normal_nucleoli(5), mitoses(1) |
| 19 |
99 |
1 |
990.441374381494 |
0 |
97%
|
0%
|
41 |
13 |
clump_thickness(3), uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(1), bare_nuclei(2), normal_nucleoli(5) |
| 20 |
105 |
1 |
990.457618695983 |
0 |
97%
|
0%
|
41 |
14 |
clump_thickness(3), uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(1), bare_nuclei(3), normal_nucleoli(5) |
| 21 |
136 |
1 |
990.7127147342 |
0 |
97%
|
0%
|
40 |
13 |
clump_thickness(4), uniformity_cell_size(1), uniformity_cell_shape(2), marginal_adhesion(1), bare_nuclei(3), normal_nucleoli(2) |
| 22 |
207 |
1 |
990.76144767767 |
0 |
97%
|
0%
|
40 |
14 |
clump_thickness(3), uniformity_cell_size(2), marginal_adhesion(2), bare_nuclei(5), normal_nucleoli(2) |
| 23 |
275 |
1 |
990.858913564609 |
0 |
97%
|
0%
|
40 |
13 |
clump_thickness(4), uniformity_cell_size(1), marginal_adhesion(2), single_epithelial_cell_size(1), bare_nuclei(3), normal_nucleoli(2) |
| 24 |
329 |
1 |
991.025679183474 |
0 |
97.21%
|
0%
|
40 |
15 |
clump_thickness(4), uniformity_cell_size(2), marginal_adhesion(2), single_epithelial_cell_size(1), bare_nuclei(4), normal_nucleoli(2) |
| 25 |
374 |
1 |
991.090656441434 |
0 |
97.21%
|
0%
|
40 |
15 |
clump_thickness(4), uniformity_cell_size(2), marginal_adhesion(2), bare_nuclei(4), bland_chromatin(1), normal_nucleoli(2) |
| 26 |
391 |
1 |
991.106900755924 |
0 |
97.21%
|
0%
|
40 |
15 |
clump_thickness(4), uniformity_cell_size(2), marginal_adhesion(1), bare_nuclei(4), bland_chromatin(1), normal_nucleoli(3) |
| 27 |
430 |
1 |
991.123145070414 |
0 |
97.21%
|
0%
|
40 |
15 |
clump_thickness(3), uniformity_cell_size(2), marginal_adhesion(2), single_epithelial_cell_size(1), bare_nuclei(3), normal_nucleoli(3), mitoses(1) |
| 28 |
459 |
1 |
991.139389384904 |
994.058586633711 |
97.21%
|
97.85%
|
40 |
14 |
clump_thickness(4), uniformity_cell_size(1), uniformity_cell_shape(1), marginal_adhesion(1), bare_nuclei(3), normal_nucleoli(3), mitoses(1) |
Events
| Time |
Event |
| 08/31/2013 19:28:45 |
Processing run 2... |
| 08/31/2013 19:28:45 |
WARNING: Changing the setting Genes clears the history |
| 08/31/2013 19:28:45 |
Applied setting Genes (5) |
| 08/31/2013 19:28:45 |
Applied setting HeadSize (5) |
| 08/31/2013 19:28:45 |
Loading run file... C:\Users\ze\Documents\GeneXproServer 5 Samples\ComplexWorkflow\1.BreastCancer_1\1.BreastCancer_000002.gep |
| 08/31/2013 19:28:46 |
Initializing run... |
| 08/31/2013 19:28:46 |
Training Set size: 466 |
| 08/31/2013 19:28:46 |
Dataset loaded. |
| 08/31/2013 19:28:46 |
Starting... |
| 08/31/2013 19:28:46 |
Generation: 0 (959.738871307634, 92.06% (429)) |
| 08/31/2013 19:28:48 |
Generation: 24 (986.615806048085, 96.35% (449)) |
| 08/31/2013 19:28:50 |
Generation: 52 (986.615806048085, 96.35% (449)) |
| 08/31/2013 19:28:52 |
Generation: 81 (988.59482604292, 96.78% (451)) |
| 08/31/2013 19:28:54 |
Generation: 111 (990.457618695983, 97.00% (452)) |
| 08/31/2013 19:28:56 |
Generation: 144 (990.7127147342, 97.00% (452)) |
| 08/31/2013 19:28:58 |
Generation: 176 (990.7127147342, 97.00% (452)) |
| 08/31/2013 19:29:00 |
Generation: 208 (990.76144767767, 97.00% (452)) |
| 08/31/2013 19:29:02 |
Generation: 238 (990.76144767767, 97.00% (452)) |
| 08/31/2013 19:29:04 |
Generation: 270 (990.76144767767, 97.00% (452)) |
| 08/31/2013 19:29:06 |
Generation: 301 (990.858913564609, 97.00% (452)) |
| 08/31/2013 19:29:08 |
Generation: 335 (991.025679183474, 97.21% (453)) |
| 08/31/2013 19:29:10 |
Generation: 369 (991.025679183474, 97.21% (453)) |
| 08/31/2013 19:29:12 |
Generation: 401 (991.106900755924, 97.21% (453)) |
| 08/31/2013 19:29:14 |
Generation: 434 (991.123145070414, 97.21% (453)) |
| 08/31/2013 19:29:16 |
Generation: 465 (991.139389384904, 97.21% (453)) |
| 08/31/2013 19:29:18 |
Generation: 496 (991.139389384904, 97.21% (453)) |
| 08/31/2013 19:29:18 |
Finished run. |
| 08/31/2013 19:29:18 |
Models created: 28 |
| 08/31/2013 19:29:18 |
Models: 28 |
| 08/31/2013 19:29:18 |
Last Model: 28 |
| 08/31/2013 19:29:18 |
Generation: 459 |
| 08/31/2013 19:29:18 |
Training Fitness: 991.139389384904 |
| 08/31/2013 19:29:18 |
Training Accuracy: 97.21% |
| 08/31/2013 19:29:18 |
Success |
| 08/31/2013 19:29:18 |
Loading run file... C:\Users\ze\Documents\GeneXproServer 5 Samples\ComplexWorkflow\1.BreastCancer_1\1.BreastCancer_000002.gep |
| 08/31/2013 19:29:18 |
Testing model 28 on the Validation Set with 233 records............. |
| 08/31/2013 19:29:18 |
Success |
1.BreastCancer_000003
Filename: 1.BreastCancer_000003.gep
|
Models
| Model |
Generation |
History |
Training Fitness |
Validation Fitness |
Training Accuracy |
Validation Accuracy |
Size |
Literals |
Variables |
| 1 |
1117 |
1 |
993.825069331081 |
977.448691765183 |
98.28%
|
97.85%
|
51 |
17 |
d0(2), d2(2), d3(5), d4(3), d5(2), d7(1), d8(2) |
| 2 |
948 |
2 |
993.410316520901 |
992.480417966935 |
97.85%
|
97.85%
|
52 |
21 |
d0(3), d1(2), d2(2), d3(2), d4(3), d5(3), d6(4), d7(1), d8(1) |
| 3 |
1166 |
3 |
991.505409251614 |
993.274158473498 |
97.64%
|
98.28%
|
49 |
17 |
d0(3), d1(2), d3(3), d5(5), d7(2), d8(2) |
| 4 |
2999 |
4 |
993.67022555274 |
994.983841195839 |
97.85%
|
98.28%
|
65 |
25 |
d0(4), d1(1), d2(3), d3(2), d4(1), d5(2), d6(4), d7(3), d8(5) |
| 5 |
36668 |
5 |
994.287509503357 |
991.314764220231 |
97.85%
|
98.28%
|
66 |
23 |
d0(4), d1(4), d2(3), d3(3), d4(2), d5(2), d6(3), d7(1), d8(1) |
| 6 |
2255 |
6 |
993.442805149881 |
992.169605581402 |
97.85%
|
98.28%
|
69 |
27 |
d0(5), d1(5), d2(1), d3(8), d4(1), d5(4), d8(3) |
| 7 |
6497 |
7 |
994.730428468551 |
994.273830470436 |
98.07%
|
98.28%
|
67 |
20 |
d0(2), d1(2), d2(2), d3(5), d5(2), d6(1), d7(2), d8(4) |
| 8 |
0 |
8 |
956.533333333333 |
0 |
83.33%
|
0%
|
54 |
20 |
d0(3), d1(2), d2(3), d3(5), d5(3), d6(1), d7(3) |
| 9 |
1 |
8 |
978.266666666667 |
987.789865941066 |
91.67%
|
97%
|
54 |
19 |
d0(3), d1(2), d2(3), d3(5), d5(3), d7(3) |
| 10 |
47 |
8 |
1000 |
9.8754015441014E-10 |
100%
|
97%
|
37 |
8 |
d0(2), d1(1), d2(1), d4(1), d7(2), d8(1) |
Events
| Time |
Event |
| 08/31/2013 19:28:45 |
Processing run 3... |
| 08/31/2013 19:28:45 |
Changed function + to weight 20. |
| 08/31/2013 19:28:45 |
Loading data from job file... |
| 08/31/2013 19:28:46 |
Loading run file... C:\Users\ze\Documents\GeneXproServer 5 Samples\ComplexWorkflow\1.BreastCancer_1\1.BreastCancer_000003.gep |
| 08/31/2013 19:28:46 |
Initializing run... |
| 08/31/2013 19:28:46 |
Training Set size: 12 |
| 08/31/2013 19:28:46 |
Dataset loaded. |
| 08/31/2013 19:28:46 |
Starting... |
| 08/31/2013 19:28:46 |
Generation: 0 (956.533333333333, 83.33% (10)) |
| 08/31/2013 19:28:47 |
Finished run. |
| 08/31/2013 19:28:47 |
Models created: 3 |
| 08/31/2013 19:28:47 |
Models: 10 |
| 08/31/2013 19:28:47 |
Last Model: 10 |
| 08/31/2013 19:28:47 |
Generation: 47 |
| 08/31/2013 19:28:47 |
Training Fitness: 1000 |
| 08/31/2013 19:28:47 |
Training Accuracy: 100.00% |
| 08/31/2013 19:28:47 |
Success |
| 08/31/2013 19:28:47 |
Loading run file... C:\Users\ze\Documents\GeneXproServer 5 Samples\ComplexWorkflow\1.BreastCancer_1\1.BreastCancer_000003.gep |
| 08/31/2013 19:28:47 |
Initializing tests for the 2 last models of run... |
| 08/31/2013 19:28:47 |
Testing model 1 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Testing model 2 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Testing model 3 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Testing model 4 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Testing model 5 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Testing model 6 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Testing model 7 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Testing model 9 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Testing model 10 on the Validation Set with 233 records............. |
| 08/31/2013 19:28:47 |
Success |
|
|
|
Job Summary
|
|
|
|
Average Best-of-Run Values
|
|
Training |
Validation |
| Fitness |
969.131795232826 |
638.814674355488 |
| Accuracy |
97.97%
|
97.28%
|
Best Model
|
|
Training |
Validation |
| Fitness |
1000 |
994.983841195839 |
| Accuracy |
100%
|
98.28%
|
| Run |
3 |
3 |
| History |
8 |
4 |
| Model |
10 |
4 |
| Size |
37 |
65 |
| Literals |
8 |
25 |
| Variables |
d0(2), d1(1), d2(1), d4(1), d7(2), d8(1) |
d0(4), d1(1), d2(3), d3(2), d4(1), d5(2), d6(4), d7(3), d8(5) |
| Variable Importance |
d0(0.502763132937366), d1(0.288898143601377), d2(6.71705262165908E-02), d4(7.95043734686166E-02), d7(6.16638237760482E-02), d8(6.99334025031576E-16) |
d0(0.117414419761626), d1(0.101411500896882), d2(0.187938347459555), d3(1.75017117304293E-02), d4(9.99532986651211E-02), d5(0.219154194970339), d6(4.23487848267816E-02), d7(0.11005352206431), d8(0.104224219624956) |
Success Rate
|
|
Training |
Validation |
| Max. Fitness |
1000 |
1000 |
| Success Rate |
33.33%
|
0%
|
Job Definition
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